Revised manuscript and Supplementary Information
Current Comments 5/6 revision, 6 September 2026. The main manuscript and SI
sources in this directory are authoritative. Default source compilation shows
yellow revision highlights; the clean and highlighted PDFs are both provided
under output/pdf/comments5-6-2026-09-06/. The two PDFs at this directory's root
are the highlighted versions.
Compile from this directory with latexmk -pdf materials_jacobian_lens.tex
and latexmk -pdf materials_jacobian_lens_supplement.tex. Keep the figures/
directory and every included .tex file beside the sources. For clean output,
set \showrevisionsfalse in a working copy of revision_highlight.tex.
The five portable data directories contain compact SI records, including the
Comment 3 retrospective sensitivity audit. The complete research data, original
analysis source, development states, full logits, and preserved diagnostics are
in lamm-mit/gemma4-interpretability on Hugging Face. The fixed data revision is
given in data_release_reference.tex and the repository's DATA_RELEASE.json.
“Frozen,” “prespecified,” and historical “preregistration” filenames refer to
internal records, with no unsupported claim of external preregistration.
Protocol dates, later public releases, and post hoc analyses are distinguished
in SI S1 and the archive chronology. Original experiment files remain intact;
SI S7A/Table S45 and comment3_causal_audit_data/ document the physical-overlap
correction to the original causal cohort's identifier checks.
SUBMISSION_FILE_MANIFEST.md inventories the current package.
SOURCE_MANIFEST.json records its file sizes and SHA-256 hashes.