# Revised manuscript and Supplementary Information

Current Comments 5/6 revision, 6 September 2026. The main manuscript and SI
sources in this directory are authoritative. Default source compilation shows
yellow revision highlights; the clean and highlighted PDFs are both provided
under `output/pdf/comments5-6-2026-09-06/`. The two PDFs at this directory's root
are the highlighted versions.

Compile from this directory with `latexmk -pdf materials_jacobian_lens.tex`
and `latexmk -pdf materials_jacobian_lens_supplement.tex`. Keep the `figures/`
directory and every included `.tex` file beside the sources. For clean output,
set `\showrevisionsfalse` in a working copy of `revision_highlight.tex`.

The five portable data directories contain compact SI records, including the
Comment 3 retrospective sensitivity audit. The complete research data, original
analysis source, development states, full logits, and preserved diagnostics are
in `lamm-mit/gemma4-interpretability` on Hugging Face. The fixed data revision is
given in `data_release_reference.tex` and the repository's `DATA_RELEASE.json`.

“Frozen,” “prespecified,” and historical “preregistration” filenames refer to
internal records, with no unsupported claim of external preregistration.
Protocol dates, later public releases, and post hoc analyses are distinguished
in SI S1 and the archive chronology. Original experiment files remain intact;
SI S7A/Table S45 and `comment3_causal_audit_data/` document the physical-overlap
correction to the original causal cohort's identifier checks.

`SUBMISSION_FILE_MANIFEST.md` inventories the current package.
`SOURCE_MANIFEST.json` records its file sizes and SHA-256 hashes.