GleghornLab/optimal_ph_DPLM2-3B_2026-04-27-19-40_RTHS

Fine-tuned with Protify.

About Protify

Protify is an open source platform designed to simplify and democratize workflows for chemical language models. With Protify, deep learning models can be trained to predict chemical properties without requiring extensive coding knowledge or computational resources.

Why Protify?

• Benchmark multiple models efficiently.
• Flexible for all skill levels.
• Accessible computing with support for precomputed embeddings.
• Cost-effective workflows for training and evaluation.

Training Run

• dataset: optimal_ph
• model: DPLM2-3B
• run_id: 2026-04-27-19-40_RTHS
• task_type: regression
• num_runs: 1

Dataset Statistics

• train_size: 7124
• valid_size: 760
• test_size: 1971

Validation Metrics

• balanced_bin_borders: [5.0, 9.0]
• balanced_binned_f1_mean: 0.382970
• balanced_binned_f1_per_bin: [0.62002, 0.52889, 0.0]
• balanced_binned_mcc: 0.336650
• balanced_binned_roc_auc_mean: 0.609870
• balanced_binned_roc_auc_per_bin: [0.72475, 0.60485, 0.5]
• balanced_n_bins: 3
• balanced_n_resamples: 100
• balanced_weighted_pearson_rho: 0.720740
• balanced_weighted_pearson_rho_std: 0.030030
• balanced_weighted_r_squared: 0.470590
• balanced_weighted_rmse: 1.700650
• balanced_weighted_spearman_rho: 0.665340
• balanced_weighted_spearman_rho_std: 0.030670
• epoch: 20.000000
• eval_balanced_bin_borders: [5.0, 9.0]
• eval_balanced_binned_f1_mean: 0.382970
• eval_balanced_binned_f1_per_bin: [0.62002, 0.52889, 0.0]
• eval_balanced_binned_mcc: 0.336650
• eval_balanced_binned_roc_auc_mean: 0.609870
• eval_balanced_binned_roc_auc_per_bin: [0.72475, 0.60485, 0.5]
• eval_balanced_n_bins: 3
• eval_balanced_n_resamples: 100
• eval_balanced_weighted_pearson_rho: 0.720740
• eval_balanced_weighted_pearson_rho_std: 0.030030
• eval_balanced_weighted_r_squared: 0.470590
• eval_balanced_weighted_rmse: 1.700650
• eval_balanced_weighted_spearman_rho: 0.665340
• eval_balanced_weighted_spearman_rho_std: 0.030670
• eval_loss: 0.796565
• eval_mae: 0.622020
• eval_model_preparation_time: 0.002000
• eval_mse: 0.796570
• eval_pear_pval: 0.000000
• eval_pearson_rho: 0.656550
• eval_r_squared: 0.425600
• eval_rmse: 0.892500
• eval_runtime: 1.070700
• eval_samples_per_second: 709.786000
• eval_spear_pval: 0.000000
• eval_spearman_rho: 0.567580
• eval_steps_per_second: 7.471000

Test Metrics

• balanced_bin_borders: [5.0, 9.0]
• balanced_binned_f1_mean: 0.390010
• balanced_binned_f1_per_bin: [0.65116, 0.51888, 0.0]
• balanced_binned_mcc: 0.335510
• balanced_binned_roc_auc_mean: 0.609630
• balanced_binned_roc_auc_per_bin: [0.74259, 0.5863, 0.5]
• balanced_n_bins: 3
• balanced_n_resamples: 100
• balanced_weighted_pearson_rho: 0.830870
• balanced_weighted_pearson_rho_std: 0.006130
• balanced_weighted_r_squared: 0.600270
• balanced_weighted_rmse: 1.425510
• balanced_weighted_spearman_rho: 0.762180
• balanced_weighted_spearman_rho_std: 0.011630
• test_loss: 0.690777
• test_mae: 0.608800
• test_model_preparation_time: 0.002000
• test_mse: 0.690780
• test_pear_pval: 0.000000
• test_pearson_rho: 0.697740
• test_r_squared: 0.481780
• test_rmse: 0.831130
• test_runtime: 2.618800
• test_samples_per_second: 752.630000
• test_spear_pval: 0.000000
• test_spearman_rho: 0.585360
• test_steps_per_second: 8.019000
• training_time_seconds: 193.692600